PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA82G00008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 101aa    MW: 11408.5 Da    PI: 5.5711
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA82G00008genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-174761796
                E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                 +pk f+++h  g+  +++ t +l++  s  +Wevk+  ++++    l +GW++F+ a++L++gDfvvF+++g+++f  +v+ 
  AA82G00008  4 DIPKAFFSKHikGS--NNGNTAKLKSdASEITWEVKM--NGRR----LCDGWEDFAVAHDLRVGDFVVFRHEGEMTF--HVTP 76
                59********8443..45668999986888*******..8887....999********************9998888..7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.605180IPR003340B3 DNA binding domain
SMARTSM010191.5E-13280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-20582IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-17577No hitNo description
SuperFamilySSF1019365.3E-18586IPR015300DNA-binding pseudobarrel domain
PfamPF023629.6E-12572IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKKDIPKAFF SKHIKGSNNG NTAKLKSDAS EITWEVKMNG RRLCDGWEDF AVAHDLRVGD  60
FVVFRHEGEM TFHVTPFGPS CCEVQYAPFC TNNEDTTDDA X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405016.17e-42hypothetical protein EUTSA_v10000130mg
SwissprotQ8H2D06e-42REM7_ARATH; B3 domain-containing protein REM7
TrEMBLV4LRL38e-42V4LRL3_EUTSA; Uncharacterized protein
STRINGAT4G31660.12e-39(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.14e-43B3 family protein